Bug#973650: marked as done (ITP: hts-nim-tools -- tools biological sequences: bam-filter, count-reads, vcf-check)
Your message dated Sun, 08 Nov 2020 22:00:09 +0000
with message-id <E1kbsjJ-0002m9-HW@fasolo.debian.org>
and subject line Bug#973650: fixed in hts-nim-tools 0.2.0-1
has caused the Debian Bug report #973650,
regarding ITP: hts-nim-tools -- tools biological sequences: bam-filter, count-reads, vcf-check
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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973650: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=973650
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: hts-nim-tools -- tools biological sequences: bam-filter, count-reads, vcf-check
Package: wnpp
Owner: Steffen Moeller <moeller@debian.org>
Severity: wishlist
* Package name : hts-nim-tools
Version : 0.2.0
Upstream Author : Brent Pedersen <@brentp>
* URL : https://github.com/brentp/hts-nim-tools
* License : MIT
Programming Lang: (C, C++, C#, Perl, Python, etc.)
Description : tools biological sequences: bam-filter, count-reads, vcf-check
This package provides several tools that (at least at the time of their creation)
provide functionalities beyond the routine provided by samtools and other reverse
dependencies of the htslib.
.
These new tools are
• bam-filter : filter BAM/CRAM/SAM files with a simple expression language
• count-reads : count BAM/CRAM reads in regions given in a BED file
• vcf-check : check regions of a VCF against a background for missing chunks
.
and yes, as the name suggests, these tools are all implemented in nim, using the
nim-hts (upstream: hts-nim) wrapper for the htslib.
Remark: This package is maintained by Steffen Moeller at
https://salsa.debian.org/med-team/hts-nim-tools
--- End Message ---
--- Begin Message ---
Source: hts-nim-tools
Source-Version: 0.2.0-1
Done: Steffen Moeller <moeller@debian.org>
We believe that the bug you reported is fixed in the latest version of
hts-nim-tools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 973650@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Steffen Moeller <moeller@debian.org> (supplier of updated hts-nim-tools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 02 Nov 2020 20:26:54 +0100
Source: hts-nim-tools
Binary: hts-nim-tools hts-nim-tools-dbgsym
Architecture: source amd64
Version: 0.2.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
hts-nim-tools - tools biological sequences: bam-filter, count-reads, vcf-check
Closes: 973650
Changes:
hts-nim-tools (0.2.0-1) unstable; urgency=medium
.
* Initial release (Closes: #973650)
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--- End Message ---
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