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Bug#965252: marked as done (ITP: vcfanno -- annotate a VCF with other VCFs/BEDs/tabixed files)

Your message dated Sun, 18 Oct 2020 19:34:50 +0000
with message-id <E1kUESA-000EwX-Ts@fasolo.debian.org>
and subject line Bug#965252: fixed in vcfanno 0.3.2+ds-1
has caused the Debian Bug report #965252,
regarding ITP: vcfanno -- annotate a VCF with other VCFs/BEDs/tabixed files
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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-- 
965252: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=965252
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist

Subject: ITP: vcfanno -- annotate a VCF with other VCFs/BEDs/tabixed files
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist

* Package name    : vcfanno
  Version         : 0.3.2+ds
  Upstream Author : Brent Pedersen and Aaron Quinlan
* URL             : https://github.com/brentp/vcfanno
* License         : MIT
  Programming Lang: Python
  Description     : annotate a VCF with other VCFs/BEDs/tabixed files
 Vcfanno allows you to quickly annotate your VCF with any number of INFO
 fields from any number of VCFs or BED files. It uses a simple conf file
 to allow the user to specify the source annotation files and fields and
 how they will be added to the info of the query VCF.
 .
   * For VCF, values are pulled by name from the INFO field with special
     cases of ID and FILTER to pull from those VCF columns.
   * For BED, values are pulled from (1-based) column number.
   * For BAM, depth (count), "mapq" and "seq" are currently supported.
 .
 Vcfanno is written in go and it supports custom user-scripts written in
 Lua. It can annotate more than 8000 variants per second with 34
 annotations from 9 files on a modest laptop and over 30K variants per
 second using 12 processes on a server.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/vcfanno

--- End Message ---
--- Begin Message --- 
Source: vcfanno
Source-Version: 0.3.2+ds-1
Done: Andreas Tille <tille@debian.org>

We believe that the bug you reported is fixed in the latest version of
vcfanno, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 965252@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated vcfanno package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sat, 18 Jul 2020 13:49:49 +0200
Source: vcfanno
Binary: vcfanno vcfanno-examples
Architecture: source all amd64
Version: 0.3.2+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 vcfanno    - annotate a VCF with other VCFs/BEDs/tabixed files
 vcfanno-examples - examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed
Closes: 965252
Changes:
 vcfanno (0.3.2+ds-1) unstable; urgency=medium
 .
   * Initial release (Closes: #965252)
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 23332b6a86f22ffcd021757b10db5c3f6eac621c 501276 vcfanno_0.3.2+ds.orig.tar.xz
 7cee63e823484bd02b0ed63e03a92feb6a97d1a9 2268644 vcfanno_0.3.2+ds-1.debian.tar.xz
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 ec761da6a39f3e661a6e3a7fc1bc3ff3db84dbb6 8052 vcfanno_0.3.2+ds-1_amd64.buildinfo
 9e9aaa792b28cf212f545fef1541eb8a344bf317 2152464 vcfanno_0.3.2+ds-1_amd64.deb
Checksums-Sha256:
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Files:
 b9f5aed0f0eb7e70d40cee21df3badd6 2434 science optional vcfanno_0.3.2+ds-1.dsc
 c886d003515e7d5faf320340663f2e39 501276 science optional vcfanno_0.3.2+ds.orig.tar.xz
 2d11e871ff94b23fc23ae38f238eea26 2268644 science optional vcfanno_0.3.2+ds-1.debian.tar.xz
 8a85bd51d85d7fcd0c0418100c947a3a 5752136 science optional vcfanno-examples_0.3.2+ds-1_all.deb
 3021392a15cce34b63b3538868cc1128 8052 science optional vcfanno_0.3.2+ds-1_amd64.buildinfo
 82cce69251016a2773293f3964fb914f 2152464 science optional vcfanno_0.3.2+ds-1_amd64.deb

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