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Bug#378289: marked as done (ITP: sigma-align -- Simple greedy multiple alignment of non-coding DNA sequences)

Your message dated Wed, 04 Oct 2006 07:53:03 -0700
with message-id <E1GV87L-0001TN-Mv@spohr.debian.org>
and subject line Bug#378289: fixed in sigma-align 1.0-1
has caused the attached Bug report to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what I am
talking about this indicates a serious mail system misconfiguration
somewhere.  Please contact me immediately.)

Debian bug tracking system administrator
(administrator, Debian Bugs database)
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>


  Package name    : sigma-align
  Version         : 1.0
  Upstream Author : Rahul Siddharthan <rsidd@imsc.res.in>
  URL             : http://www.imsc.res.in/~rsidd/sigma/
  License         : GPL
  Description     : Simple greedy multiple alignment of non-coding DNA sequences

 Sigma ("Simple greedy multiple alignment") is an alignment program with
 a new algorithm and scoring scheme designed specifically for non-coding
 DNA sequence. It uses a strategy of seeking the best possible gapless
 local alignments, at each step making the best possible alignment
 consistent with existing alignments, and scores the significance of the
 alignment based on the lengths of the aligned fragments and a
 background model which may be supplied or estimated from an auxiliary
 file of intergenic DNA. With real data, while "correctness" can't be
 directly quantified for the alignment, running the PhyloGibbs motif
 finder on pre-aligned sequence suggests that Sigma's alignments are
 superior. It has been published in BMC Bioinformatics. 2006 Mar
 16;7:143.
 .
  Homepage: http://www.imsc.res.in/~rsidd/sigma/


-- System Information:
Debian Release: testing/unstable
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing')
Architecture: powerpc (ppc64)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.16farm
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)

--- End Message ---
--- Begin Message --- 
Source: sigma-align
Source-Version: 1.0-1

We believe that the bug you reported is fixed in the latest version of
sigma-align, which is due to be installed in the Debian FTP archive:

sigma-align_1.0-1.diff.gz
  to pool/main/s/sigma-align/sigma-align_1.0-1.diff.gz
sigma-align_1.0-1.dsc
  to pool/main/s/sigma-align/sigma-align_1.0-1.dsc
sigma-align_1.0-1_amd64.deb
  to pool/main/s/sigma-align/sigma-align_1.0-1_amd64.deb
sigma-align_1.0-1_i386.deb
  to pool/main/s/sigma-align/sigma-align_1.0-1_i386.deb
sigma-align_1.0-1_sparc.deb
  to pool/main/s/sigma-align/sigma-align_1.0-1_sparc.deb
sigma-align_1.0.orig.tar.gz
  to pool/main/s/sigma-align/sigma-align_1.0.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 378289@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <charles-debian-nospam@plessy.org> (supplier of updated sigma-align package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.7
Date: Tue,  5 Sep 2006 23:14:46 +0900
Source: sigma-align
Binary: sigma-align
Architecture: source i386 amd64 sparc
Version: 1.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <charles-debian-nospam@plessy.org>
Description: 
 sigma-align - Simple greedy multiple alignment of non-coding DNA sequences
Closes: 378289
Changes: 
 sigma-align (1.0-1) unstable; urgency=low
 .
   * Initial release Closes: #378289
Files: 
 4fd5ead4abee276b7b941b02c3e4e8d2 724 science optional sigma-align_1.0-1.dsc
 a0bdcee5e4cb59a18e602f4926ede9bc 10205 science optional sigma-align_1.0.orig.tar.gz
 d12dbfa06c2f81b22d22b50b1f78c05e 3646 science optional sigma-align_1.0-1.diff.gz
 1fa517969f5668799683ba87132e0569 133984 science optional sigma-align_1.0-1_i386.deb
 6eca4d65e110723f83665b38e2539f11 157688 science optional sigma-align_1.0-1_sparc.deb
 2404fa34d3a864711d47e257405ffa92 147500 science optional sigma-align_1.0-1_amd64.deb

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--- End Message ---
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