Re: r-bioc-complexheatmap: Error: C stack usage in test suite
Hi Zuguang,
On Mon, Jul 27, 2020 at 08:07:10AM +0000, Gu, Zuguang wrote:
> I have updated the ComplexHeatmap package on Bioconductor. The version is increased to 2.4.3. You can find the link here:
Thanks a lot I've uploaded this version to the Debian new queue.
Kind regards
Andreas.
> https://bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html
>
> Cheers,
> Zuguang
>
> ________________________________________
> From: Andreas Tille <tille@debian.org>
> Sent: 21 July 2020 21:53
> To: Gu, Zuguang
> Cc: debian-r@lists.debian.org
> Subject: Re: r-bioc-complexheatmap: Error: C stack usage in test suite
>
> Hi Zuguang Gu,
>
> On Tue, Jul 21, 2020 at 07:19:02PM +0000, Gu, Zuguang wrote:
> > Thanks for your email!
> >
> > Yes, that was a bug and I think I have fixed it in the recent versions. You can see all the tests are passed in the following links:
> >
> > https://travis-ci.org/github/jokergoo/ComplexHeatmap
> > http://bioconductor.org/checkResults/devel/bioc-LATEST/ComplexHeatmap/
>
> Ahhh, thanks for confirming.
>
> > A recent feedback from users says the error of "Error: C stack usage" still occurs for huge matrix where the values are all identical (this is a very rare case), which means this bug might have not been completely fixed yet.
> >
> > What should I do now? Should I just comment these lines that cause errors in the script? Which version of the package are you testing? The Bioconductor release version or development version?
>
> In Debian we always are packaging released BioConductor versions (so
> currently I'm talking about version 2.4.2). It would help if you
> could issue a 2.4.3 bugfix release. Alternatively you could send me
> a patch I could add to the packaging but I guess other users would
> profit from a bugfix release as well.
>
> Thanks a lot for your quick response
>
> Andreas.
>
> --
> http://fam-tille.de
>
>
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