On 1/17/22 2:42 AM, Andreas Tille wrote:
Hi, my time to upgrade packages today is running out. I assumed that the autopkgtest of idseq-bench might need internet-access which I enabled but it seems there is some other issue[1]
Looking at it, it looks like it is stemming from insilicoseq's /usr/bin/iss and trying it locally with different dataset, I confirmed the problem. insilicoseq's iss binary is not compatible with the newer biopython 1.79. I patched it to work, not sure if it works perfect, but for sure better than earlier (completely broken) I tried locally, and it works now. I have uploaded insilicoseq with patch applied, and will try idseq-bench salsa CI once the next dinstall happens. Regards, Nilesh
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