Re: Hmmer2 fork / enhancements (Was: Is my post making it to the mailing list?)

[Joshua Marshall <jrmarsha@mtu.edu>]

Andreas: Both uploads are identical, but I'd defer to the Michigan Tech one as the reference since it is tied to the institution.

Andrius: 3.0 and 3.1 are a different development line and are oddly different so that wouldn't help here.  Thanks for the thought, though.

On Fri, Jan 11, 2019 at 4:09 AM Andrius Merkys <andrius.merkys@gmail.com> wrote:

Hello,

On 2019-01-11 04:42, Joshua Marshall wrote:
> Does anyone on this list have an interest or use case for Hmmer2?  I'd like to put a pin in this.

I have been using programs from hmmer Debian packages (3.0 and 3.1, I guess) in a pipeline for protein structure prediction some three years ago. I could share my pipeline (Makefile + some scripts, ultimately feeding multiple alignment to 'modeller') if needed.

Best,
Andrius

--
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania